nf-core / nf-core/phageannotator
No fasta input implemented?
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Description
Description of the bug
Greetings,
I saw on the illustrated workflow that the input could either be a sample sheet with fastq.gz files as described in the documentation, or a fasta file of contigs from an assembly. However, in the documentation, the said fasta isn't mentioned; hasn't it been implemented yet or am I missing something?
Also, would it be possible to use contigs from an assembly of ONT reads, or is it tailored for Illumina sequencing data?
Thanks in advance,
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
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Research direction
No relevant files, tests, command, or entry point are identified. Start by comparing the illustrated workflow with the documentation and locating the pipeline's input definition; check whether FASTA contigs and ONT assemblies are supported. Done should clearly document the supported inputs and any required implementation scope.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering, documentation
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100