nf-core / nf-core/phageannotator
iPHOP downloads the wrong database for its current version
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bug
- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of the bug
The current version is v1.3.2, the latest is v1.3.3. The new version came with a new database.
The best solution is probably to update to the latest version, but it could also be set to download the older database with --db_version iPHoP_db_Sept21_rw
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Begin by reproducing the database download for v1.3.2 and inspect the version and database selection path, then compare it with v1.3.3 and the --db_version iPHoP_db_Sept21_rw option. Done means the pipeline downloads the database matching its current version, or explicitly selects the older database when that option is used.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100