nf-core / nf-core/phageannotator
Replace mash screen with sylph
Open
Nobody has claimed this yet.
- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
https://github.com/bluenote-1577/sylph Waiting for paper to be published (https://www.biorxiv.org/content/10.1101/2023.11.20.567879v2)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Read the phageannotator workflow and the linked sylph repository and paper first; no specific files or tests are identified in the issue. The work is complete when the existing mash screen is replaced by sylph after the paper publication, with the pipeline still identifying, annotating, and quantifying phage sequences.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100