nf-core / nf-core/phageannotator
Replace BLAST with skani for ani clustering
Open
Nobody has claimed this yet.
- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
This issue has no description.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue body names no files, tests, entry points, or acceptance criteria. Begin by locating the workflow step that performs ANI clustering and identify how BLAST is currently invoked; completion would require replacing that step with skani and confirming the pipeline's clustering behavior.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 15/100