nf-core / nf-core/phageannotator
Add vrhyme modules to workflow
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
- Install vrhyme/vrhyme module using
nf-core modules install ... - Add vrhyme modules to
workflows/phageannotator.nf - Update
nextflow.configto include vrhyme parameters - Update
nextflow_schema.jsonto include vrhyme params usingnf-core schema build - Update
conf/modules.configto include vrhyme extra arguments - Test vrhyme modules using
nextflow run . -profile test,singularity --outdir results - Lint additions using
nf-core lint - Sync vrhyme branch with nf-core/phageannotatr:dev once PR #7 has been merged.
- Submit a PR vrhyme modules
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with workflows/phageannotator.nf and inspect the existing module patterns before installing the vrhyme/vrhyme modules. Then review nextflow.config, nextflow_schema.json, and conf/modules.config for the related parameters and arguments. Run nextflow run . -profile test,singularity --outdir results and nf-core lint; the checklist is complete when tests and lint pass and the branch is synced after PR #7 merges.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100