nf-core / nf-core/pathogensurveillance
If there are no variants print a warning message in messages.tsv
Open
Nobody has claimed this yet.
- Dominant language
- Nextflow
- Stars
- 61
- Forks
- 8
- Avg merge
- 2d 6h
- Merged PRs (30d)
- 1
Description
This issue has no description.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No source file or test is named. Start by locating where messages.tsv is produced and where variant results are checked; then identify the existing warning or message conventions. Done means a no-variant run emits a warning in messages.tsv, with coverage in the relevant test if one exists.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100