nf-core / nf-core/pathogensurveillance
Handle SRA accessions that dont have data assocaited with them
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@worthyc51 is already working on this.
Since Aug 21, 2026.
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Description
for example:
Command error:
2026-04-30T00:18:44 fasterq-dump.3.0.8 err: name not found while resolving query within virtual file system module - failed to resolve accession 'ERR14225744' - no data ( 404 )
2026-04-30T00:18:45 fasterq-dump.3.0.8 err: name not found while resolving query within virtual file system module - failed to resolve accession 'ERR14225744' - no data ( 404 )
fasterq-dump quit with error code 3
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