nf-core / nf-core/pathogenepidemiology
Decide on Long Read variant caller that supports polyploidy (fit for MOI analysis)
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- Dominant language
- Nextflow
- Stars
- 3
- Forks
- 2
- Avg merge
- 2d 23h
- Merged PRs (30d)
- 6
Description
TODO: Look into DeepVariant
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or entry points. Start by investigating DeepVariant and compare long-read variant callers for polyploidy and MOI analysis; done means documenting a chosen caller that fits those requirements.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100