Replace pipeline parameter `skip_snp` to `skip_snv`
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enhancement
- Dominant language
- Nextflow
- Stars
- 16
- Forks
- 14
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Would it make sense to rename skip_snp to skip_snv? The current name is somewhat misleading because this parameter actually controls small variant calling (SNVs and small indels) rather than SNPs only.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating every reference to the pipeline parameter skip_snp, including its declaration and usage. Rename it to skip_snv while preserving its control of SNV and small-indel calling, then verify that no skip_snp references remain.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100