nf-core / nf-core/ncrnannotator
Missing params in cmsearch?
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- Avg merge
- 9d 13h
- Merged PRs (30d)
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Description
Some command line options might be missing here:
potentially --rfam --cutga
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start in modules/local/cmsearch/main.nf at lines 22-27 and inspect the cmsearch command and its existing options. Check whether --rfam and --cutga should be passed, then verify that the command includes the required parameters and that the workflow still runs as expected.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, cli
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 68/100