Add PINTS Visualizer
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 25
- Forks
- 11
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Visualize TSS signals
pints_visualizer -b GROcap_hg38.uniq.bam \
-e GROcap \
--mapq-threshold 255 \
--chromosome-start-with chr \
-o GROcap_hg38 \
--filters U13369 chrM EBV
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the pipeline entry point and the outputs corresponding to the GROcap example command. Run the shown pints_visualizer invocation to understand the expected visualization inputs and output, then determine how it should be integrated into nascent. Done means the pipeline provides a documented, working way to visualize TSS signals.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100