nf-core / nf-core/multiplesequencealign
Fasta test file containing seatoxin reference sequences incorrectly named
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enhancement
good first issue
- Dominant language
- Nextflow
- Stars
- 41
- Forks
- 14
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
The test file for seatoxin reference sequences has a typo and needs to be renamed from setoxin-ref.fa to seatoxin-ref.fa (file here. All instances referencing this file should be updated (e.g. samplesheet)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with testdata/setoxin-ref.fa in the linked test-datasets repository and inspect the samplesheet and other references mentioned in the issue. Rename the file to testdata/seatoxin-ref.fa, update every reference to the old name, and verify that no instances of setoxin-ref.fa remain.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 35/100