nf-core / nf-core/multiplesequencealign
Add preprocessing step to optionally clean the sequence headers
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enhancement
- Dominant language
- Nextflow
- Stars
- 41
- Forks
- 14
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
like having . or other symbols.
e.g. mafft guidetree substitutes . with _ , this creates problems with downstream processes
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. Start by locating the pipeline's preprocessing and sequence-header handling, then clarify which symbols should be cleaned and how the option is enabled; done means the optional behavior is defined and downstream header problems are addressed.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100