[Bug] meta_fb never defined in CELLRANGER_MULTI
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bug
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Description
Have you checked the docs?
Description of the bug
fb_options_r1_length = fb_options_use && meta_fb.options.containsKey("r1-length") ? "r1-length,${meta_fb.options["r1-length"]}" : ''
fb_options_r2_length = fb_options_use && meta_fb.options.containsKey("r2-length") ? "r2-length,${meta_fb.options["r2-length"]}" : ''
meta_fb is an undefined var in this process.
It should be replaced with fb_options.
Will make a PR tomorrow.
@tgelafr-pfzr
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System information
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
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Research direction
Read modules/nf-core/cellranger/multi/main.nf around lines 126-127, where the undefined meta_fb variable is used in the feature-barcode options expressions. Replace those references with fb_options, then verify that the module parses and the feature-barcode length options use the intended values.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 1/5
- Estimated time
- Under an hour
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 55/100