FASTQC command number expected for "--memory"
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Description
Have you checked the docs?
Description of the bug
The memory conversion method in the FASTQC module generates a decimal which then throws a Value "XXX.XXX" invalid for option memory (number expected) message. Details in the github issue below:
https://github.com/DIncalciLab/samurai/issues/58
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the FASTQC module's memory conversion and compare its generated command with the failure described in the linked samurai issue. Confirm the --memory value is accepted as a number rather than a decimal, then verify the module's relevant test or command output if available.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100