Wrong output definition in wisecondorx/predict
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Description
Have you checked the docs?
Description of the bug
One of the optional outputs (chr_statistics) looks for the pattern *_chr_statistics.txt, but the actual output from the program follows the pattern*_statistics.txt, hence it will never be captured, and it will be silent because said output is optional.
Discovered downstream in https://github.com/DIncalciLab/samurai/pull/51.
Command used and terminal output
N/A
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Locate the nf-core module definition for wisecondorx/predict and inspect the optional chr_statistics output declaration. Compare its filename pattern with the reported *_statistics.txt output; done when that optional file is captured correctly and the module’s checks pass.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100