nf-core / nf-core/modules

deeparg hamronization meta.yml

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Description

Have you checked the docs?
Description of the bug

There's an error in the meta.yml file of the hamronization module for deeparg. The 'tsv' output is declared as a '.json' file output here:

https://github.com/nf-core/modules/blob/bc4ad3855d9b44430e20c324c3bf9d32c56de2a0/modules/nf-core/hamronization/deeparg/meta.yml#L63-L65

Command used and terminal output

Relevant files

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System information

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Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Open modules/nf-core/hamronization/deeparg/meta.yml and inspect lines 63–65, where the tsv output is declared with a .json extension. Update the declaration so it matches the tsv output, then verify that the metadata consistently describes the module's output.

Written by the indexing model from the issue text.

Assessment

Tech stack
yaml
Domain
tooling
Issue type
Bug
Difficulty
1/5
Estimated time
Under an hour
Activity status
Stale
Clarity
Clearly specified
Newbie friendliness
50/100

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