Using docker wave container throws error message for some files

Have you checked the docs?

• nf-core website: troubleshooting
• nf-core modules documentation

Description of the bug

I was using the QUAST module in a workflow and got the following error. Trying to rerun with the latest biocontainer image (quay.io/biocontainers/quast:5.3.0--py313pl5321h5ca1c30_2) worked fine.

Command used and terminal output

Command error:
  WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
  terminate called after throwing an instance of 'std::system_error'
    what():  Operation not permitted
  terminate called after throwing an instance of 'std::system_error'
    what():  Operation not permitted
  /usr/local/bin/_activate_current_env.sh: line 35:    14 Aborted                 (core dumped) micromamba activate "${ENV_NAME:-base}"

Relevant files

No response

System information

nextflow version: 24.10.3
docker version: 24.0.2

Start by reproducing the QUAST module failure with Nextflow 24.10.3 and Docker 24.0.2, using the container details in the report. Compare that run with quay.io/biocontainers/quast:5.3.0--py313pl5321h5ca1c30_2 and inspect the module's container configuration and activation output. Done means identifying the module or container incompatibility and verifying the result with a regression check.