new module: svaba/annotate
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new module
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- Dominant language
- Nextflow
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- 429
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Description
Is there an existing module for this?
- I have searched for the existing module
Is there an open PR for this?
- I have searched for existing PRs
Is there an open issue for this?
- I have searched for existing issues
Further Information
Following up on bug #5822, there is a community script that, with a few edits, could potentially fix this bug and convert BNDs to more specific SVTYPES. I have the module ready and tested.
Are you going to work on this?
- If I'm planning to work on this module, I added myself to the
Assigneesto facilitate tracking who is working on the module
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading bug #5822 and locating the referenced community script. Review the ready and tested module described in this issue, then verify that it addresses the BND-to-SVTYPE behavior; the issue does not name a file or test path to run.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, tooling
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100