nf-core / nf-core/modules

[BATCH] Module updates requiring pipeline updates

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Description

[!WARNING]
Please open PRs against the batch_update_staging branch. Then we can have small, easy to review, atomic PRs but also merge all batch updates to the modules repo in one go.

[!NOTE]
I opened this new meta issue as GitHub will stop supporting tasklists and goes for subissues instead. The original issue with all batch updates is https://github.com/nf-core/modules/issues/5828

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the batch_update_staging branch and review the original batch-updates issue, nf-core/modules#5828, for the module changes and pipeline updates this meta issue refers to. The issue is done when the required atomic pull requests have been opened against that branch and the batch updates can be merged together.

Written by the indexing model from the issue text.

Assessment

Domain
tooling
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
15/100

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