update module: update GATK Mutect2 to identifies mutations in the individual’s mtDNA.
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update module
- Dominant language
- Nextflow
- Stars
- 429
- Forks
- 1.1k
- Avg merge
- 1d 6h
- Merged PRs (30d)
- 153
Description
Is there an existing module for this?
- I have searched for the existing module
Is there an open PR for this?
- I have searched for existing PRs
Is there an open issue for this?
- I have searched for existing issues
Are you going to work on this?
- If I'm planning to work on this module, I added myself to the
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Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Locate the existing GATK Mutect2 module and review its current inputs and outputs to determine how mitochondrial-DNA identification should be represented. Validate the module with the repository's nf-test workflow, and consider the work done when it identifies mutations in an individual's mtDNA.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 38/100