Cardinal Data import
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Description
Is there an existing module for this?
- I have searched for the existing module
Is there an open PR for this?
- I have searched for existing PRs
Is there an open issue for this?
- I have searched for existing issues
Further Information
Provide support for Cardinal R package for data import and preprocessing MSI datasets in imzML formal
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Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No implementation files or tests are named. Start by reviewing the Cardinal package documentation and existing nf-core/modules patterns for data-import modules, then define the module entry point and validation for Cardinal-based import and preprocessing of MSI datasets in imzML format. Done means the module supports the requested workflow and its behavior is covered by relevant nf-test cases.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics, data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Active
- Clarity
- Mostly clear
- Newbie friendliness
- 50/100