Update output to use type dir
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enhancement
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Description
We should probably try to do this systematically for all modules 🤔 In this case it was already annotated in the meta yaml:
Originally posted by @ewels in https://github.com/nf-core/modules/issues/6645#issuecomment-2352128611
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with modules/nf-core/sratools/prefetch/meta.yml at the referenced output metadata and inspect how its type is declared. Review related module outputs to determine the scope of the systematic update; done means the affected modules consistently use the intended dir type.
Written by the indexing model from the issue text.
Assessment
- Domain
- tooling
- Issue type
- Refactor
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100