Add renovate comments to environment.yml
Open
@edmundmiller is already working on this.
Since Aug 30, 2024.
- Dominant language
- Nextflow
- Stars
- 429
- Forks
- 1.1k
- Avg merge
- 1d 6h
- Merged PRs (30d)
- 153
Description
Essentially we need to add to all the environment.ymls
channels:
- conda-forge
- bioconda
dependencies:
# renovate: datasource=conda depName=bioconda/bwa
- bwa=0.7.18
# renovate: datasource=conda depName=bioconda/samtools
- samtools=1.20
# renovate: datasource=conda depName=bioconda/htslib
- htslib=1.20.0
We can also keep the channel definitions if the consensus is that they're important. I've got a PR to enable either https://github.com/nf-core/modules/pull/5400
channels:
- conda-forge
- bioconda
dependencies:
# renovate: datasource=conda depName=bioconda/bwa
- bioconda::bwa=0.7.18
# renovate: datasource=conda depName=bioconda/samtools
- bioconda::samtools=1.20
# renovate: datasource=conda depName=bioconda/htslib
- bioconda::htslib=1.20.0
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
This issue has not been assessed yet.