Add `deprecated` flag for deprecated modules
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- Dominant language
- Nextflow
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Description
Is your feature request related to a problem? Please describe
Together with the deprecation instructions for modules. We should add a deprecated flag to the meta.yml. This flag will be used to exclude these modules from website and nf-core/tools listing.
Also related to: https://github.com/nf-core/tools/issues/2905
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the module meta.yml files and the deprecation instructions linked in the issue, then read nf-core/tools issue #2905 to understand the consumer-side expectations. Done means the deprecated flag is consistently represented and deprecated modules are excluded from the website and nf-core/tools listings.
Written by the indexing model from the issue text.
Assessment
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100