[FEATURE] subworkflows/multiple_impute_glimpse2
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- Nextflow
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Description
Is your feature request related to a problem? Please describe
subworkflows/multiple_impute_glimpse2 only runs glimpse_phase on first chunk generated by glimpse_chunk.
Describe the solution you'd like
I would like to be able to pass in a chromosome for the region and automatically run phase on all chunks generated in the text file.
Describe alternatives you've considered
Modifying subworkflow to run GLIMPSE2_SPLITREFERENCE and GLIMPSE2_PHASE on all outputs in split_input
Additional context
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Read subworkflows/multiple_impute_glimpse2 and trace how glimpse_chunk feeds glimpse_phase, including the split_input outputs. Review the proposed GLIMPSE2_SPLITREFERENCE and GLIMPSE2_PHASE flow for chromosome-specific input. Done means phase runs automatically for every chunk listed in the text file, rather than only the first chunk.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100