nf-core / nf-core/modules

deeptools_bamcoverage fails silently

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#2,322 3 comments 0 reactions 1 assignee View on GitHub

@edmundmiller is already working on this.

Since Oct 17, 2022.

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Description

Have you checked the docs?
Description of the bug

There's no outputs caught because both bigWig and the bedGraph as optional, so it fails silently if --outFileFormat, -of isn't set in the args or the ext.prefix isn't set correctly

Command used and terminal output

No response

Relevant files

No response

System information

No response

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