nf-core / nf-core/modules

Adopt topic channels in all nf-core modules [PART 8]

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Nextflow
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Description

Parent issue and instructions: #9978

PROBLEMATIC MODULES HERE: #12792

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the parent issue #9978 and the problematic modules issue #12792, which contain the instructions and module scope for this part. Apply the requested topic-channel adoption to all modules identified there, and consider the work done when those problematic modules conform to the parent issue's requirements.

Written by the indexing model from the issue text.

Assessment

Domain
tooling
Issue type
Refactor
Difficulty
4/5
Estimated time
3-5 days
Activity status
Active
Clarity
Needs clarification
Newbie friendliness
35/100

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