new module: ALDY/PROFILE
@rkmishra3893 is already working on this.
Since May 12, 2026.
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Description
Is there an existing module for this?
- I have searched for the existing module
Is there an open PR for this?
- I have searched for existing PRs
Is there an open issue for this?
- I have searched for existing issues
Further Information
GitHub Repo: https://github.com/0xTCG/aldy
Summary: "Genotyping and phasing of pharmacogenes using star-allele nomenclature"
Description: Aldy 4 is a tool for allelic decomposition (haplotype reconstruction) and
exact genotyping of highly polymorphic and structurally variant pharmacogenes
(CYP2D6, CYP2A6, CYP2B6, CYP2C19, DPYD and others). It uses integer
linear programming to call star-alleles with phasing support for WGS, WES,
PGRNseq, PacBio HiFi, and 10X Genomics data.
Doc_url: https://aldy.readthedocs.io/en/latest/
Conda package is not available in Bioconda or Conda. But I have submitted a pull request to include the recipes.
https://github.com/bioconda/bioconda-recipes/pull/65276
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Software requirements (conda)
---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
- conda-forge
- bioconda
dependencies:
- bioconda::ALDY=4.8.3
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
This issue has not been assessed yet.