new module: ALDY/GENOTYPE

Is there an existing module for this?

• I have searched for the existing module

Is there an open PR for this?

• I have searched for existing PRs

Is there an open issue for this?

• I have searched for existing issues

Further Information

GitHub Repo: https://github.com/0xTCG/aldy

Summary: "Genotyping and phasing of pharmacogenes using star-allele nomenclature"
Description: Aldy 4 is a tool for allelic decomposition (haplotype reconstruction) and
exact genotyping of highly polymorphic and structurally variant pharmacogenes
(CYP2D6, CYP2A6, CYP2B6, CYP2C19, DPYD and others). It uses integer
linear programming to call star-alleles with phasing support for WGS, WES,
PGRNseq, PacBio HiFi, and 10X Genomics data.

Doc_url: https://aldy.readthedocs.io/en/latest/

Conda package is not available in Bioconda or Conda. But I have submitted a pull request to include the recipes.
https://github.com/bioconda/bioconda-recipes/pull/65276

Are you going to work on this?

• If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

Software requirements (conda)

---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
  - conda-forge
  - bioconda
dependencies:
  - bioconda::aldy=4.8.3

Start with the nf-core/modules repository conventions and the Aldy documentation linked in the issue, then confirm the conda dependency specification for aldy 4.8.3. Add the ALDY/GENOTYPE module and verify that the module uses the declared dependency and can invoke Aldy as documented.