Update metaphlan module
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update module
- Dominant language
- Nextflow
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- 429
- Forks
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- Avg merge
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- Merged PRs (30d)
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Description
Metaphlan version in both conda and singularity is currently 4.1.1. To update to a new version (4.2.*), we will need to update the reference database. An updated database has been added by nf-core/test-datasets#2031.
This will also be required to adding humann v4 (see #11192 and #11201 for discussion)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the existing MetaPhlAn module entries for the conda and Singularity variants, then review the updated reference database in nf-core/test-datasets#2031. Update the module to the 4.2.* release and database, and verify the related HUMAnN v4 discussion in issues #11192 and #11201 is addressed.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, tooling
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 52/100