new module: PHOLD (multiple subcommands)
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new module
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- Stars
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- Avg merge
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- Merged PRs (30d)
- 153
Description
Is there an existing module for this?
- I have searched for the existing module
Is there an open PR for this?
- I have searched for existing PRs
Is there an open issue for this?
- I have searched for existing issues
Further Information
https://github.com/gbouras13/phold
Are you going to work on this?
- If I'm planning to work on this module, I added myself to the
Assigneesto facilitate tracking who is working on the module
Software requirements (conda)
---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
- conda-forge
- bioconda
dependencies:
- bioconda::phold=1.2.5
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the linked PHOLD repository and inspect how its multiple subcommands are exposed, then compare that with the nf-core module conventions. The stated conda dependency is phold 1.2.5 from bioconda; done means the requested subcommands are covered and the dependency is represented correctly.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, tooling
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 48/100