new module: cellphenonis/*

Is there an existing module for this?

• I have searched for the existing module

Is there an open PR for this?

• I have searched for existing PRs

Is there an open issue for this?

• I have searched for existing issues

Further Information

This is a high-throughput nuclei instance segmentation module for 3D teravoxel lightsheet microscopy images implemented in CellPheno. CellPheno NIS uses a 2D-to-3D segmentation approach so that the speed can be twice that of NuMorph and triple that of CellPose with a better performance (F1/Precision/Recall scores > 0.9).

Are you going to work on this?

• If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

Software requirements (conda)

---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
  - conda-forge
  - bioconda
dependencies:
  # TODO: 
  # - bioconda::????

Read the linked CellPheno paper first and resolve the TODO in the conda requirements block. Then identify the module entry point and validation expected by nf-core/modules; done means a complete cellphenonis module with declared dependencies and passing project checks.