new module: openms/idconflictresolver
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new module
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Description
Is there an existing module for this?
- I have searched for the existing module
Is there an open PR for this?
- I have searched for existing PRs
Is there an open issue for this?
- I have searched for existing issues
Further Information
OpenMS TOPP tool that resolves conflicting peptide identifications mapped to the same feature in consensus/feature maps, keeping the best-scoring ID. Upstream: https://github.com/OpenMS/OpenMS. Part of meta-issue #11290.
Are you going to work on this?
- If I'm planning to work on this module, I added myself to the
Assigneesto facilitate tracking who is working on the module
Software requirements (conda)
---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
- conda-forge
- bioconda
dependencies:
- bioconda::openms=3.5.0
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the nf-core/modules conventions and the OpenMS upstream project linked in the issue, then review meta-issue #11290 for related module work. Add the openms/idconflictresolver module for the specified conda dependency, and verify that it resolves conflicting peptide identifications by keeping the best-scoring ID.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 55/100