new module: openms/featurefinderidentification
Open
Nobody has claimed this yet.
new module
wishlist
- Dominant language
- Nextflow
- Stars
- 429
- Forks
- 1.1k
- Avg merge
- 1d 6h
- Merged PRs (30d)
- 153
Description
Is there an existing module for this?
- I have searched for the existing module
Is there an open PR for this?
- I have searched for existing PRs
Is there an open issue for this?
- I have searched for existing issues
Further Information
OpenMS TOPP tool that detects and quantifies peptide features in LC-MS data guided by peptide identifications (targeted feature finding). Upstream: https://github.com/OpenMS/OpenMS. Part of meta-issue #11290.
Are you going to work on this?
- If I'm planning to work on this module, I added myself to the
Assigneesto facilitate tracking who is working on the module
Software requirements (conda)
---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
- conda-forge
- bioconda
dependencies:
- bioconda::openms=3.5.0
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The requested entry point is a new nf-core module for the OpenMS FeatureFinderIdentification TOPP tool. Start by reviewing comparable modules in this repository and its nf-test conventions, using the listed OpenMS 3.5.0 conda dependency as the runtime requirement. Done means the module is represented consistently and passes the repository checks.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, tooling
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 55/100