new module: circlator
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@cwoodside1278 is already working on this.
Since Mar 21, 2026.
new module
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Description
Is there an existing module for this?
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Is there an open PR for this?
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Further Information
Tool information
- Tool: circlator
- Subcommand:
circlator all - Conda/Bioconda package:
circlator - License: GPL-3.0
- Publication: Hunt et al., Genome Biology 2015. https://doi.org/10.1186/s13059-015-0849-0
Description
circlator all runs the full Circlator pipeline to automate circularization of genome assemblies
from long sequencing reads (PacBio / Oxford Nanopore). It sequentially runs: mapreads, bam2reads,
assemble, merge, clean, and fixstart.
Inputs:
- Assembly (FASTA)
- Long reads (FASTA/FASTQ)
Outputs:
- Circularized assembly (FASTA)
- Log files
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Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
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