[FEATURE] Migrate samtools nf-tests to `nft-bam`
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Description
Is your feature request related to a problem? Please describe
Migrate samtools test to use nft-bam plugin to get better testing for data that actually matters (e.g. skip unstable headers)
Describe the solution you'd like
No response
Describe alternatives you've considered
No response
Additional context
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the existing samtools nf-tests and the nft-bam plugin usage in the repository. The work is complete when the samtools tests use nft-bam and cover relevant data while skipping unstable headers.
Written by the indexing model from the issue text.
Assessment
- Domain
- testing-qa
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100