Add SNP calling
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enhancement
- Dominant language
- Nextflow
- Stars
- 198
- Forks
- 181
- Avg merge
- 6d 17h
- Merged PRs (30d)
- 1
Description
It would be nice to be able to have the option of calling variants from bisulfite data.
It shouldn't be too tricky to add Bis-SNP or something similar as a new opt-in process. There may be other / better tools also?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the Bis-SNP project linked in the issue and compare it with other possible tools for calling variants from bisulfite data. Determine the scope of an opt-in process and define completion as a supported variant-calling option for this data type.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100