Add `gunc_checkm_summary.tsv` table to `bin_summary.tsv
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enhancement
- Dominant language
- Nextflow
- Stars
- 321
- Forks
- 156
- Avg merge
- 12h 59m
- Merged PRs (30d)
- 5
Description
Description of feature
This includes additional useful stats of GUNC's contamination estimation and it's CSS score that can be used for estimating chimerism; but it also nicely reports whether a MAg has reached the medium- and high-quality MIMAG score!
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Locate where bin_summary.tsv is generated and where gunc_checkm_summary.tsv is produced or exposed. Review the available contamination, CSS, and MIMAG quality statistics, then verify that the requested table data appears in bin_summary.tsv with the expected values.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100