Consider using Taxometer (From VAMB) for taxonomic classification of metagenomic contigs
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 321
- Forks
- 156
- Avg merge
- 12h 59m
- Merged PRs (30d)
- 5
Description
Description of feature
Paper: https://www.nature.com/articles/s41467-024-52771-y
Slack discussion: https://nfcore.slack.com/archives/CE9MS66BS/p1732599286165359
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked Taxometer paper and the referenced Slack discussion to understand the proposed classification approach and its fit for this workflow. No files, tests, or entry points are named, so identify the relevant workflow components before defining an implementation scope. Done would require a clear decision and an agreed plan for integrating Taxometer.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100