Enter at postbinning stage
Nobody has claimed this yet.
- Dominant language
- Nextflow
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- 321
- Forks
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- Avg merge
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- Merged PRs (30d)
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Description
Description of feature
Decided I wanted to try and bin my data using Vamb, which isn't in the pipeline yet. Would be a useful feature to be able to supply a csv (or directory?) of bins and jump directly into the bin QC/taxonomy/annotation steps!
Might try my hand at this one if I find a bit of time, but I suspect that it will be finnicky depending on what exact metadata we will want to tag onto the input bins and that might need some discussion.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. First review the existing bin QC, taxonomy, and annotation stages and determine the supported input contract for externally supplied Vamb bins; done means those bins can enter the pipeline and complete those stages with the required metadata.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100