nf-core / nf-core/genomeassembler
Clean up reporting module
Nobody has claimed this yet.
- Dominant language
- Nextflow
- Stars
- 34
- Forks
- 22
- Avg merge
- 1d 13h
- Merged PRs (30d)
- 13
Description
The qmd files that forms the basis for the report works, but is hard to maintain.
It is hard to maintain because it was cobbled together iteratively, tracking expansions to the pipeline, and I simply did not have time and resources to polish it. It is also not internally completely consistent, and the generation of the pages from R templates is ok. The templates could be cleaned up, and there is likely plenty of room for optimization and refactors.
This is not really a nextflow task, but an R/quarto task.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the qmd files that form the report and the R templates used to generate its pages. Review their inconsistencies and repeated pipeline-specific structure, then define completion as a cleaner, internally consistent reporting module with any justified optimizations and refactors applied.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data-visualization
- Issue type
- Refactor
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Active
- Clarity
- Needs clarification
- Newbie friendliness
- 45/100