Add support for reading external InterProScan results as pipeline input
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 119
- Forks
- 40
- Avg merge
- 2d 17h
- Merged PRs (30d)
- 5
Description
Description of feature
It would be nice to have a way of reading and InterProScan TSV file (for example one produced by nf-core/proteinannotator) as input to nf-core/funcscan.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing nf-core/funcscan's existing pipeline input handling and the InterProScan TSV output described in the issue, using nf-core/proteinannotator as the example source. Determine how external results should enter the workflow and what validation or conversion is required; done means an InterProScan TSV can be supplied as pipeline input and used by funcscan.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100