Integrate the existing eggNOG-mapper module into the pipeline
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 119
- Forks
- 40
- Avg merge
- 2d 17h
- Merged PRs (30d)
- 5
Description
Description of feature
There's an nf-core module available for eggNOG-mapper: https://nf-co.re/modules/eggnogmapper
It could be worth integrating this into the pipeline as an alternative to InterProScan.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Review the nf-core eggNOG-mapper module linked in the issue and compare its integration requirements with the pipeline's existing InterProScan path. Identify the relevant pipeline entry points and determine how eggNOG-mapper should be exposed as an alternative; done means the module runs through the pipeline with documented configuration and validation.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100