nf-core / nf-core/funcscan

Add pharokka to nf-core/funcscan

Open
#329 0 comments 0 reactions 1 assignee View on GitHub

@CarsonJM is already working on this.

Since Jan 12, 2024.

feature-request
Dominant language
Nextflow
Stars
119
Forks
40
Avg merge
2d 17h
Merged PRs (30d)
5

Description

pharokka (https://github.com/gbouras13/pharokka) is a tool used to functionally annotate phage sequences. It is similar to its bacterial counterparts (Prokka and Bakta).

### Tasks
- [ ] https://github.com/nf-core/modules/issues/4619
- [ ] Add pharokka to nf-core/funcscan

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.