Adapt deepBGC to use GPUs
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 119
- Forks
- 40
- Avg merge
- 2d 17h
- Merged PRs (30d)
- 5
Description
Description of feature
Adapt deepBGC to use GPU, at the moment it uses CPU and for large input datasets takes ages to run.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating how deepBGC is invoked in the funcscan workflow and how its current CPU execution is configured. Define which GPU-capable execution path and supported environments are required, then verify that large input datasets run successfully with GPU acceleration.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100