nf-core / nf-core/funcscan

Benchmarking tests showing resource values are suboptimal

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bug low-priority
Dominant language
Nextflow
Stars
119
Forks
40
Avg merge
2d 17h
Merged PRs (30d)
5

Description

Description of the bug

Benchmarking tests showing resource values are suboptimal when applied to full-size modern data.

We should increase resources to reduce the numbers of retries and resumes that are required.

Command used and terminal output

No response

Relevant files

No response

System information

No response

Contributor guide

Open the contributing guide

First steps

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  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

No relevant files, commands, or benchmark outputs are identified in the issue. Start by locating the benchmarking tests and their resource settings, then compare runs on full-size modern data; done means the resource values reduce the required retries and resumes.

Written by the indexing model from the issue text.

Assessment

Domain
performance, testing-qa
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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