nf-core / nf-core/funcprofiler
Move to official bioconda containers for HUMAnN v4
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 3
- Forks
- 5
- Avg merge
- 2d 23m
- Merged PRs (30d)
- 1
Description
Description of feature
Once full v4 databases and software are released, and the bioconda recipe for v4 has been merged, lets depreciate the custom docker images in favor of bioconda + wave containers.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the custom Docker image references in the pipeline and review how bioconda and Wave containers are configured. Wait for the full HUMAnN v4 databases, software release, and merged bioconda recipe; done means the custom images are deprecated and the pipeline uses the official containers.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- docker
- Domain
- devops
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100