nf-core / nf-core/funcprofiler
Pending tasks for v1.0.0
Open
Nobody has claimed this yet.
- Dominant language
- Nextflow
- Stars
- 3
- Forks
- 5
- Avg merge
- 2d 23m
- Merged PRs (30d)
- 1
Description
Blocking
- Port local modules to nf-core/modules
mifaser— WIP in nf-core/modules#11643humann/humann— WIP in nf-core/modules#11201fmhfunprofiler— bioconda submission needed first
- Valid
test_fullconfig - Remove TODO comments from module files
- Fix code formatting (
nextflow lint --format) - Fix parameter default inconsistencies (
nf-core pipeline schema build)
Docs (non-blocking)
-
docs/output.md— FastQC outputs, per-tool descriptions, website admonitions -
docs/usage.md— website admonitions, database version notes - Separate test configs for tools disabled in
conf/test.config
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by inspecting the current test_full configuration and conf/test.config to identify tools that are disabled and how test inputs are defined. Done means the full test configuration is valid and separate test configs exist for the disabled tools listed in the issue.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100