nf-core / nf-core/funcprofiler
Consider adding SHOGUN support?
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 3
- Forks
- 5
- Avg merge
- 2d 23m
- Merged PRs (30d)
- 1
Description
Description of feature
I don't know of anyone using this tool, but it does feel like it belongs here.
Github: https://github.com/knights-lab/SHOGUN
Paper: https://academic.oup.com/bioinformatics/article/36/13/4088/5828930
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the linked SHOGUN GitHub repository and Bioinformatics paper to understand the tool and its expected integration. Then inspect the existing funcprofiler workflow and supported-tool conventions; done means defining the integration scope and acceptance criteria, since this issue names no files, tests, or concrete behavior.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100